Our students are publishing!

In the past 10 years MCDB students have co-authored more than 800 papers, averaging about 80 papers per year.  Here we feature some of those papers, emphasizing those with first authorship. MCDB student names shown in bold.  The average MCDB student publishes 5 papers including 2 as first author.

Featured student publications

Julia Faraone

Continued evasion of neutralizing antibody response by Omicron XBB.1.16
Faraone JN, Qu P, Zheng YM, Carlin C, Jones D, Panchal AR, Saif LJ, Oltz EM, Gumina RJ, Liu SL
Cell Rep. 2023 Oct 31;42(10):113193

Anuvrat Sircar

Exploiting the fibroblast growth factor receptor-1 vulnerability to therapeutically restrict the MYC-EZH2-CDKN1C axis-driven proliferation in Mantle cell lymphoma
Sircar A, Singh S, Xu-Monette ZY, Coyle KM, Hilton LK, Chavdoula E, Ranganathan P, Jain N, Hanel W, Tsichlis P, Alinari L, Peterson BR, Tao J, Muthusamy N, Baiocchi R, Epperla N, Young KH, Morin R, Sehgal L
Leukemia. 2023 Oct;37(10):2094-2106

Gargi Mishra

The metabolic and functional roles of sensory nerves in adipose tissues
Mishra G, Townsend KL
Nat Metab. 2023 Sep;5(9):1461-1474

Other featured student publications

Strains of Anaplasma phagocytophilum from horses in Ohio are related to isolates from humans in the northeastern USA.
Chien RC, Mingqun L, Yan Q, Randolph N, Huang W, Wellman M, Toribio R, Rikihisa Y.
Microbiol Spectr. 2023 Dec 12;11(6):e0263223

Active Hexose-Correlated Compound Shows Direct and Indirect Effects against Chronic Lymphocytic Leukemia
Merchand-Reyes G, Santhanam R, Valencia-Pena ML, Kumar K, Mo X, Belay T, Woyach JA, Mundy-Bosse B, Tridandapani S, Butchar JP
Nutrients. 2023 Dec 18;15(24):5138

N-Acetylcysteine and Atherosclerosis: Promises and Challenges
Cui Y, Zhu Q, Hao H, Flaker GC, Liu Z
Antioxidants (Basel). 2023 Dec 4;12(12):2073

Immune imprinting as a barrier to effective COVID-19 vaccines
Faraone JN, Liu SL
Cell Rep Med. 2023 Nov 21;4(11):101291

Determining the defining lengths between mature microRNAs/small interfering RNAs and tinyRNAs
Sim G, Kehling AC, Park MS, Divoky C, Zhang H, Malhotra N, Secor J, Nakanishi K
Sci Rep. 2023 Nov 13;13(1):19761

Challenges and Prospects in Developing Future SARS-CoV-2 Vaccines: Overcoming Original Antigenic Sin and Inducing Broadly Neutralizing Antibodies
Evans JP, Liu SL
J Immunol. 2023 Nov 15;211(10):1459-1467

Immune evasion and membrane fusion of SARS-CoV-2 XBB subvariants EG.5.1 and XBB.2.3
Faraone JN, Qu P, Goodarzi N, Zheng YM, Carlin C, Saif LJ, Oltz EM, Xu K, Jones D, Gumina RJ, Liu SL
Emerg Microbes Infect. 2023 Dec;12(2):2270069

Mechanisms of tertiary lymphoid structure formation: cooperation between inflammation and antigenicity
Khanal S, Wieland A, Gunderson AJ
Front Immunol. 2023 Sep 21;14:1267654

Continued evasion of neutralizing antibody response by Omicron XBB.1.16
Faraone JN, Qu P, Zheng YM, Carlin C, Jones D, Panchal AR, Saif LJ, Oltz EM, Gumina RJ, Liu SL
Cell Rep. 2023 Oct 31;42(10):113193

The metabolic and functional roles of sensory nerves in adipose tissues
Mishra G, Townsend KL
Nat Metab. 2023 Sep;5(9):1461-1474

Exploiting the fibroblast growth factor receptor-1 vulnerability to therapeutically restrict the MYC-EZH2-CDKN1C axis-driven proliferation in Mantle cell lymphoma
Sircar A, Singh S, Xu-Monette ZY, Coyle KM, Hilton LK, Chavdoula E, Ranganathan P, Jain N, Hanel W, Tsichlis P, Alinari L, Peterson BR, Tao J, Muthusamy N, Baiocchi R, Epperla N, Young KH, Morin R, Sehgal L
Leukemia. 2023 Oct;37(10):2094-2106

Tomatidine targets ATF4-dependent signaling and induces ferroptosis to limit pancreatic cancer progression
Mukherjee D, Chakraborty S, Bercz L, D'Alesio L, Wedig J, Torok MA, Pfau T, Lathrop H, Jasani S, Guenther A, McGue J, Adu-Ampratwum D, Fuchs JR, Frankel TL, Pietrzak M, Culp S, Strohecker AM, Skardal A, Mace TA
iScience. 2023 Jul 17;26(8):107408

MicroRNA: trends in clinical trials of cancer diagnosis and therapy strategies
Kim T, Croce CM
Exp Mol Med. 2023 Jul;55(7):1314-1321

Dynamic Reassociation of the Nuclear Lamina with Newly Replicated DNA
Lovejoy CM, Nagarajan P, Parthun MR
Res Sq. 2023 May 9:rs.3.rs-2846826

Neutralization escape of Omicron XBB, BR.2, and BA.2.3.20 subvariants
Faraone JN, Qu P, Evans JP, Zheng YM, Carlin C, Anghelina M, Stevens P, Fernandez S, Jones D, Lozanski G, Panchal A, Saif LJ, Oltz EM, Gumina RJ, Liu SL
Cell Rep Med. 2023 May 16;4(5):101049

Osteosarcoma tumors maintain intra-tumoral transcriptional heterogeneity during bone and lung colonization
Rajan S, Franz EM, McAloney CA, Vetter TA, Cam M, Gross AC, Taslim C, Wang M, Cannon MV, Oles A, Roberts RD
BMC Biol. 2023 Apr 27;21(1):98

Structurally Complex Osteosarcoma Genomes Exhibit Limited Heterogeneity within Individual Tumors and across Evolutionary Time
Rajan S, Zaccaria S, Cannon MV, Cam M, Gross AC, Raphael BJ, Roberts RD
Cancer Res Commun. 2023 Apr 12;3(4):564-575

Attack of the clones: An NK cell origins story
Caporale JR, Lee DA
Mol Ther Oncolytics. 2023 Mar 14;29:1-3

HIV-1 Gag Binds the Multi-Aminoacyl-tRNA Synthetase Complex via the EPRS Subunit
Jin D, Zhu Y, Schubert HL, Goff SP, Musier-Forsyth K
Viruses. 2023 Feb 8;15(2):474

Functional Epigenomics: Pioneering Changes in Chromatin Structure
Tallan A, Hoffman RA, Stanton BZ
Biochemistry. 2023 Mar 21;62(6):1111-1113

The PRMT5 inhibitor EPZ015666 is effective against HTLV-1-transformed T-cell lines in vitro and in vivo
Ernzen K, Melvin C, Yu L, Phelps C, Niewiesk S, Green PL, Panfil AR
Front Microbiol. 2023 Feb 2;14:1101544

Molecular regulation of satellite cells via intercellular signaling
Yeh CJ, Sattler KM, Lepper C
Gene. 2023 Mar 30;858:147172

Aminoacylation-defective bi-allelic mutations in human EPRS1 associated with psychomotor developmental delay, epilepsy, and deafness
Jin D, Wek SA, Cordova RA, Wek RC, Lacombe D, Michaud V, Musier-Forsyth K
Clin Genet. 2023 Mar;103(3):358-363

Keeping development on time: Insights into post-transcriptional mechanisms driving oscillatory gene expression during vertebrate segmentation
Blatnik MC, Gallagher TL, Amacher SL
Wiley Interdiscip Rev RNA. 2023 Jan;14(1):e1751

Aminoacylation-defective bi-allelic mutations in human EPRS1 associated with psychomotor developmental delay, epilepsy, and deafness
Jin D, Wek SA, Cordova RA, Wek RC, Lacombe D, Michaud V, Musier-Forsyth K
Clin Genet. 2022 Nov 21. Online ahead of print

Manganese-dependent microRNA trimming by 3'→5' exonucleases generates 14-nucleotide or shorter tiny RNAs
Sim G, Kehling AC, Park MS, Secor J, Divoky C, Zhang H, Malhotra N, Bhagdikar D, Abd El-Wahab EW, Nakanishi K
Proc Natl Acad Sci U S A. 2022 Dec 20;119(51):e2214335119

Neutralization of SARS-CoV-2 Omicron sub-lineages BA.1, BA.1.1, and BA.2
Evans JP, Zeng C, Qu P, Faraone J, Zheng YM, Carlin C, Bednash JS, Zhou T, Lozanski G, Mallampalli R, Saif LJ, Oltz EM, Mohler PJ, Xu K, Gumina RJ, Liu SL
Cell Host Microbe. 2022 Aug 10;30(8):1093-1102

CRISPR Gene Editing of Human Primary NK and T Cells for Cancer Immunotherapy
Elmas E, Saljoughian N, de Souza Fernandes Pereira M, Tullius BP, Sorathia K, Nakkula RJ, Lee DA, Naeimi Kararoudi M
Front Oncol. 2022 Apr 5;12:834002

Inhibition of BKCa channels protects neonatal hearts against myocardial ischemia and reperfusion injury
Sanghvi S, Szteyn K, Ponnalagu D, Sridharan D, Lam A, Hansra I, Chaudhury A, Majumdar U, Kohut AR, Gururaja Rao S, Khan M, Garg V, Singh H
Cell Death Discov. 2022 Apr 7;8(1):175

ROR1 targeted immunoliposomal delivery of OSU-2S shows selective cytotoxicity in t(1;19)(q23;p13) translocated B-cell acute lymphoblastic leukemia
Goswami S, Chiang CL, Zapolnik K, Nunes J, Ventura A, Mo X, Xie Z, Lee LJ, Baskar S, Rader C, Byrd JC, Phelps M, Bhatnagar B, Muthusamy N
Leuk Res. 2022 Jul;118:106872

Durability of Booster mRNA Vaccine against SARS-CoV-2 BA.2.12.1, BA.4, and BA.5 Subvariants
Qu P, Faraone JN, Evans JP, Zheng YM, Yu L, Ma Q, Carlin C, Lozanski G, Saif LJ, Oltz EM, Gumina RJ, Liu SL
N Engl J Med. 2022 Oct 6;387(14):1329-1331

EWS/FLI mediated reprogramming of 3D chromatin promotes an altered transcriptional state in Ewing sarcoma
Showpnil IA, Selich-Anderson J, Taslim C, Boone MA, Crow JC, Theisen ER, Lessnick SL.
Nucleic Acids Res. 2022 Sep 23;50(17):9814-9837

Regulation of HTLV-1 transformation
Ernzen KJ, Panfil AR
Biosci Rep. 2022 Mar 31;42(3):BSR20211921

Escherichia coli alanyl-tRNA synthetase maintains proofreading activity and translational accuracy under oxidative stress
Kavoor A, Kelly P, Ibba M.
J Biol Chem. 2022 Mar;298(3):101601

PP2A is a therapeutically targetable driver of cell fate decisions via a c-Myc/p21 axis in human and murine acute myeloid leukemia
Goswami S, Mani R, Nunes J, Chiang CL, Zapolnik K, Hu E, Frissora F, Mo X, Walker LA, Yan P, Bundschuh R, Beaver L, Devine R, Tsai YT, Ventura A, Xie Z, Chen M, Lapalombella R, Walker A, Mims A, Larkin K, Grieselhuber N, Bennett C, Phelps M, Hertlein E, Behbehani G, Vasu S, Byrd JC, Muthusamy N
Blood. 2022 Mar 3;139(9):1340-1358

A review of physical activity in pancreatic ductal adenocarcinoma: Epidemiology, intervention, animal models, and clinical trials
Hsueh HY, Pita-Grisanti V, Gumpper-Fedus K, Lahooti A, Chavez-Tomar M, Schadler K, Cruz-Monserrate Z
Pancreatology. 2022 Jan;22(1):98-111

Humanized Dsp ACM Mouse Model Displays Stress-Induced Cardiac Electrical and Structural Phenotypes
Stevens TL, Manring HR, Wallace MJ, Argall A, Dew T, Papaioannou P, Antwi-Boasiako S, Xu X, Campbell SG, Akar FG, Borzok MA, Hund TJ, Mohler PJ, Koenig SN, El Refaey M
Cells. 2022 Sep 29;11(19):3049

Dynein localization and pronuclear movement in the C. elegans zygote
Ignacio DP, Kravtsova N, Henry J, Palomares RH, Dawes AT
Cytoskeleton (Hoboken). 2022 Oct 10. Online ahead of print

SARS-CoV-2 Nsp14 protein associates with IMPDH2 and activates NF-κB signaling
Li TW, Kenney AD, Park JG, Fiches GN, Liu H, Zhou D, Biswas A, Zhao W, Que J, Santoso N, Martinez-Sobrido L, Yount JS, Zhu J
Front Immunol. 2022 Sep 13;13:1007089

Disruption of Nurse-like Cell Differentiation as a Therapeutic Strategy for Chronic Lymphocytic Leukemia
Merchand-Reyes G, Santhanam R, Robledo-Avila FH, Weigel C, Ruiz-Rosado JD, Mo X, Partida-Sánchez S, Woyach JA, Oakes CC, Tridandapani S, Butchar JP
J Immunol. 2022 Sep 15;209(6):1212-1223

Keeping development on time: Insights into post-transcriptional mechanisms driving oscillatory gene expression during vertebrate segmentation
Blatnik MC, Gallagher TL, Amacher SL
Wiley Interdiscip Rev RNA. 2022 Jul 19:e1751. Online ahead of print

Mineralocorticoid Receptor Signaling in the Inflammatory Skeletal Muscle Microenvironments of Muscular Dystrophy and Acute Injury
Howard ZM, Gomatam CK, Piepho AB, Rafael-Fortney JA
Front Pharmacol. 2022 Jun 28;13:942660

Differential regulation of CTLA4 expression through BTK-dependent and independent mechanisms in CLL
Yano M, Nunes J, Mo X, Rogers KA, Woyach JA, Byrd JC, Muthusamy N
Blood Adv. 2022 Sep 27;6(18):5440-5448

Valinophos Reveals a New Route in Microbial Phosphonate Biosynthesis That Is Broadly Conserved in Nature
Zhang Y, Chen L, Wilson JA, Cui J, Roodhouse H, Kayrouz C, Pham TM, Ju KS
J Am Chem Soc. 2022 Jun 8;144(22):9938-9948

Biosynthesis of Argolaphos Illuminates the Unusual Biochemical Origins of Aminomethylphosphonate and Nε-Hydroxyarginine Containing Natural Products
Zhang Y, Pham TM, Kayrouz C, Ju KS
J Am Chem Soc. 2022 Jun 8;144(22):9634-9644

Tobacco mosaic virus movement protein complements a Potato spindle tuber viroid RNA mutant impaired for mesophyll entry but not mutants unable to enter the phloem
Wu J, Bisaro DM
PLoS Pathog. 2022 Dec 27;18(12):e1011062

Emerging strategies in targeting tumor-resident myeloid cells for cancer immunotherapy
Wang Y, Johnson KCC, Gatti-Mays ME, Li Z
J Hematol Oncol. 2022 Aug 28;15(1):118

Saliva and Lung Microbiome Associations with Electronic Cigarette Use and Smoking
Ying KL, Brasky TM, Freudenheim JL, McElroy JP, Nickerson QA, Song MA, Weng DY, Wewers MD, Whiteman NB, Mathe EA, Shields PG
Cancer Prev Res (Phila). 2022 Jul 5;15(7):435-446

Distinct Roles for KASH Proteins SINE1 and SINE2 in Guard Cell Actin Reorganization, Calcium Oscillations, and Vacuolar Remodeling
Biel A, Moser M, Groves NR, Meier I
Front Plant Sci. 2022 May 6;13:784342

Allosteric regulation controls actin-bundling properties of human plastins
Schwebach CL, Kudryashova E, Agrawal R, Zheng W, Egelman EH, Kudryashov DS
Nat Struct Mol Biol. 2022 Jun;29(6):519-528

Neutralization of the SARS-CoV-2 Deltacron and BA.3 Variants
Evans JP, Qu P, Zeng C, Zheng YM, Carlin C, Bednash JS, Lozanski G, Mallampalli RK, Saif LJ, Oltz EM, Mohler PJ, Gumina RJ, Liu SL
N Engl J Med. 2022 Jun 16;386(24):2340-2342

BEX1 is a critical determinant of viral myocarditis
Martens CR, Dorn LE, Kenney AD, Bansal SS, Yount JS, Accornero F
PLoS Pathog. 2022 Feb 22;18(2):e1010342

Neutralizing antibody responses elicited by SARS-CoV-2 mRNA vaccination wane over time and are boosted by breakthrough infection
Evans JP, Zeng C, Carlin C, Lozanski G, Saif LJ, Oltz EM, Gumina RJ, Liu SL
Sci Transl Med. 2022 Mar 23;14(637):eabn8057

Heat increases full-length SMN splicing: promise for splice-augmenting therapies for SMA
Dominguez CE, Cunningham D, Venkataramany AS, Chandler DS
Hum Genet. 2022 Feb;141(2):239-256

Immediate induction of varicosities by transverse compression but not uniaxial stretch in axon mechanosensation
Sun C, Qi L, Cheng Y, Zhao Y, Gu C
Acta Neuropathol Commun. 2022 Jan 24;10(1):7

The Heartwarming Effect of Brown Adipose Tissue
Pinckard KM, Stanford KI
Mol Pharmacol. 2022 Jul;102(1):460-471

Visualizing Muscle Sialic Acid Expression in the GNED207VTgGne-/- Cmah-/- Model of GNE Myopathy: A Comparison of Dietary and Gene Therapy Approaches
Crowe KE, Zygmunt DA, Heller K, Rodino-Klapac L, Noguchi S, Nishino I, Martin PT
J Neuromuscul Dis. 2022;9(1):53-71

T cell exhaustion-a memory locked behind scars
Yousif A, Ghoneim HE
Nat Immunol. 2021 Aug;22(8):938-940

Diverse regulatory mechanisms of StARkin domains in land plants and mammals
Dresden CE, Ashraf Q, Husbands AY
Curr Opin Plant Biol. 2021 Dec;64:102148

Protein acetylation in cardiac aging
Francois A, Canella A, Marcho LM, Stratton MS
J Mol Cell Cardiol. 2021 Aug;157:90-97

The Heartwarming Effect of Brown Adipose Tissue.
Pinckard KM, Stanford KI.Mol Pharmacol. 2022 Jul;102(1):460-471

Epigenetic regulation of nuclear lamina-associated heterochromatin by HAT1 and the acetylation of newly synthesized histones
Popova LV, Nagarajan P, Lovejoy CM, Sunkel BD, Gardner ML, Wang M, Freitas MA, Stanton BZ, Parthun MR
Nucleic Acids Res. 2021 Dec 2;49(21):12136-12151

A review of physical activity in pancreatic ductal adenocarcinoma: Epidemiology, intervention, animal models, and clinical trials
Hsueh HY, Pita-Grisanti V, Gumpper-Fedus K, Lahooti A, Chavez-Tomar M, Schadler K, Cruz-Monserrate Z
Pancreatology. 2022 Jan;22(1):98-111

Viruses in the Heart: Direct and Indirect Routes to Myocarditis and Heart Failure
Martens CR, Accornero F
Viruses. 2021 Sep 24;13(10):1924

Tgfβ1-Cthrc1 Signaling Plays an Important Role in the Short-Term Reparative Response to Heart Valve Endothelial Injury
Nordquist EM, Dutta P, Kodigepalli KM, Mattern C, McDermott MR, Trask AJ, LaHaye S, Lindner V, Lincoln J
Arterioscler Thromb Vasc Biol. 2021 Dec;41(12):2923-2942

Chemotherapy-Induced Changes in the Lung Microenvironment: The Role of MMP-2 in Facilitating Intravascular Arrest of Breast Cancer Cells
Middleton JD, Sivakumar S, Hai T
Int J Mol Sci. 2021 Sep 24;22(19):10280

Cardiac-derived TGF-β1 confers resistance to diet-induced obesity through the regulation of adipocyte size and function
Longenecker JZ, Petrosino JM, Martens CR, Hinger SA, Royer CJ, Dorn LE, Branch DA, Serrano J, Stanford KI, Kyriazis GA, Baskin KK, Accornero F
Mol Metab. 2021 Dec;54:101343

Disease-associated mutations in a bifunctional aminoacyl-tRNA synthetase gene elicit the integrated stress response
Jin D, Wek SA, Kudlapur NT, Cantara WA, Bakhtina M, Wek RC, Musier-Forsyth K
J Biol Chem. 2021 Oct;297(4):101203

A Multi-Omics Approach Using a Mouse Model of Cardiac Malformations for Prioritization of Human Congenital Heart Disease Contributing Genes
Matos-Nieves A, Manivannan S, Majumdar U, McBride KL, White P, Garg V
Front Cardiovasc Med. 2021 Aug 24;8:683074

Stress-Inducible Gene Atf3 Dictates a Dichotomous Macrophage Activity in Chemotherapy-Enhanced Lung Colonization
Middleton JD, Fehlman J, Sivakumar S, Stover DG, Hai T
Int J Mol Sci. 2021 Jul 8;22(14):7356

Lipopolysaccharide from the commensal microbiota of the breast enhances cancer growth: role of S100A7 and TLR4
Wilkie T, Verma AK, Zhao H, Charan M, Ahirwar DK, Kant S, Pancholi V, Mishra S, Ganju RK
Mol Oncol. 2022 Apr;16(7):1508-1522

Pre-clinical dose-escalation studies establish a therapeutic range for U7snRNA-mediated DMD exon 2 skipping
Simmons TR, Vetter TA, Huang N, Vulin-Chaffiol A, Wein N, Flanigan KM
Mol Ther Methods Clin Dev. 2021 Mar 23;21:325-340

DNA methylation epitypes highlight underlying developmental and disease pathways in acute myeloid leukemia
Giacopelli B, Wang M, Cleary A, Wu YZ, Schultz AR, Schmutz M, Blachly JS, Eisfeld AK, Mundy-Bosse B, Vosberg S, Greif PA, Claus R, Bullinger L, Garzon R, Coombes KR, Bloomfield CD, Druker BJ, Tyner JW, Byrd JC, Oakes CC
Genome Res. 2021 May;31(5):747-761

Phospho-ablation of cardiac sodium channel Nav1.5 mitigates susceptibility to atrial fibrillation and improves glucose homeostasis under conditions of diet-induced obesity
Dewal RS, Greer-Short A, Lane C, Nirengi S, Manzano PA, Hernández-Saavedra D, Wright KR, Nassal D, Baer LA, Mohler PJ, Hund TJ, Stanford KI
Int J Obes (Lond). 2021 Apr;45(4):795-807

MicroRNA and ER stress in cancer
Kim T, Croce CM
Semin Cancer Biol. 2021 Oct;75:3-14

Defective immunometabolism pathways in cystic fibrosis macrophages
Hamilton K, Krause K, Badr A, Daily K, Estfanous S, Eltobgy M, Khweek AA, Anne MNK, Carafice C, Baetzhold D, Tonniges JR, Zhang X, Gavrilin MA, Parinandi NL, Amer AO
J Cyst Fibros. 2021 Jul;20(4):664-672

A Novel Endocrine Role for the BAT-Released Lipokine 12,13-diHOME to Mediate Cardiac Function
Pinckard KM, Shettigar VK, Wright KR, Abay E, Baer LA, Vidal P, Dewal RS, Das D, Duarte-Sanmiguel S, Hernández-Saavedra D, Arts PJ, Lehnig AC, Bussberg V, Narain NR, Kiebish MA, Yi F, Sparks LM, Goodpaster BH, Smith SR, Pratley RE, Lewandowski ED, Raman SV, Wold LE, Gallego-Perez D, Coen PM, Ziolo MT, Stanford KI
Circulation. 2021 Jan 12;143(2):145-15

The Branched Nature of the Nonsense-Mediated mRNA Decay Pathway
Yi Z, Sanjeev M, Singh G
Trends Genet. 2021 Feb;37(2):143-159

The small G-protein RalA promotes progression and metastasis of triple-negative breast cancer
Thies KA, Cole MW, Schafer RE, Spehar JM, Richardson DS, Steck SA, Das M, Lian AW, Ray A, Shakya R, Knoblaugh SE, Timmers CD, Ostrowski MC, Chakravarti A, Sizemore GM, Sizemore ST
Breast Cancer Res. 2021 Jun 12;23(1):65

Stromal Platelet-Derived Growth Factor Receptor-β Signaling Promotes Breast Cancer Metastasis in the Brain
Thies KA, Hammer AM, Hildreth BE 3rd, Steck SA, Spehar JM, Kladney RD, Geisler JA, Das M, Russell LO, Bey JF 4th, Bolyard CM, Pilarski R, Trimboli AJ, Cuitiño MC, Koivisto CS, Stover DG, Schoenfield L, Otero J, Godbout JP, Chakravarti A, Ringel MD, Ramaswamy B, Li Z, Kaur B, Leone G, Ostrowski MC, Sizemore ST, Sizemore GM
Cancer Res. 2021 Feb 1;81(3):606-618

Metabolic Regulation of Stem Cells in Aging
Keller A, Temple T, Sayanjali B, Mihaylova MM
Curr Stem Cell Rep. 2021 Jun;7(2):72-84

FOXP3 Is an X-Linked Breast Cancer Suppressor Gene and an Important Repressor of the HER-2/ErbB2 Oncogene
Zuo T, Wang L, Morrison C, Chang X, Zhang H, Li W, Liu Y, Wang Y, Liu X, Chan MWY, Liu JQ, Love R, Liu CG, Godfrey V, Shen R, Huang TH, Yang T, Park BK, Wang CY, Zheng P, Liu Y
Cell. 2021 Dec 22;184(26):6378

Role of host factors in SARS-CoV-2 entry
Evans JP, Liu SL
J Biol Chem. 2021 Jul;297(1):100847

Plastin 3 in X-Linked Osteoporosis: Imbalance of Ca2+-Dependent Regulation Is Equivalent to Protein Loss
Schwebach CL, Kudryashova E, Kudryashov DS
Front Cell Dev Biol. 2021 Jan 21;8:635783

Arabidopsis KASH Proteins SINE1 and SINE2 Are Involved in Microtubule Reorganization During ABA-Induced Stomatal Closure
Biel A, Moser M, Meier I
Front Plant Sci. 2020 Nov 20;11:575573

Soy-tomato enriched diet reduces inflammation and disease severity in a pre-clinical model of chronic pancreatitis
Mukherjee D, DiVincenzo MJ, Torok M, Choueiry F, Kumar RJ, Deems A, Miller JL, Hinton A, Geraghty C, Maranon JA, Kulp SK, Coss C, Carson WE 3rd, Conwell DL, Hart PA, Cooperstone JL, Mace TA
Sci Rep. 2020 Dec 11;10(1):21824

Fine-Tuning of Alanyl-tRNA Synthetase Quality Control Alleviates Global Dysregulation of the Proteome
Kelly P, Kavoor A, Ibba M
Genes (Basel). 2020 Oct 18;11(10):1222

Regulation of cellular immunity by activating transcription factor 4
Mukherjee D, Bercz LS, Torok MA, Mace TA
Immunol Lett. 2020 Dec;228:24-34

Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis
Showpnil IA, Miller KR, Taslim C, Pishas KI, Lessnick SL, Theisen ER
J Vis Exp. 2020 Jun 27;(160):10.3791/61564

LINC-complex mediated positioning of the vegetative nucleus is involved in calcium and ROS signaling in Arabidopsis pollen tubes
Moser M, Kirkpatrick A, Groves NR, Meier I
Nucleus. 2020 Dec;11(1):149-163

Impact and Intricacies of Bone Marrow Microenvironment in B-cell Lymphomas: From Biology to Therapy
Sircar A, Chowdhury SM, Hart A, Bell WC, Singh S, Sehgal L, Epperla N
Int J Mol Sci. 2020 Jan 30;21(3):904

A Role for Plant KASH Proteins in Regulating Stomatal Dynamics
Biel A, Moser M, Meier I
Plant Physiol. 2020 Feb;182(2):1100-1113

Analyzing (Re)Capping of mRNA Using Transcript Specific 5' End Sequencing
Del Valle Morales D, Schoenberg DR
Bio Protoc. 2020 Oct 20;10(20):e3791

Biased Pol II fidelity contributes to conservation of functional domains in the Potato spindle tuber viroid genome
Wu J, Bisaro DM
PLoS Pathog. 2020 Dec 22;16(12):e1009144

De novo synthesis and salvage pathway coordinately regulate polyamine homeostasis and determine T cell proliferation and function
Wu R, Chen X, Kang S, Wang T, Gnanaprakasam JR, Yao Y, Liu L, Fan G, Burns MR, Wang R
Sci Adv. 2020 Dec 16;6(51):eabc4275

Single-Cell Techniques and Deep Learning in Predicting Drug Response
Wu Z, Lawrence PJ, Ma A, Zhu J, Xu D, Ma Q
Trends Pharmacol Sci. 2020 Dec;41(12):1050-1065

Human Argonaute2 and Argonaute3 are catalytically activated by different lengths of guide RNA
Park MS, Sim G, Kehling AC, Nakanishi K
Proc Natl Acad Sci U S A. 2020 Nov 17;117(46):28576-28578

Rapid profiling of G2 phase to mitosis progression by flow cytometry in asynchronous cells
Sherman J, Wang R
Cell Cycle. 2020 Nov;19(21):2897-2905

Specific Targeting of Notch Ligand-Receptor Interactions to Modulate Immune Responses: A Review of Clinical and Preclinical Findings
Goruganthu MUL, Shanker A, Dikov MM, Carbone DP
Front Immunol. 2020 Aug 14;11:1958

Epitranscriptomics in the Heart: a Focus on m6A
Longenecker JZ, Gilbert CJ, Golubeva VA, Martens CR, Accornero F
Curr Heart Fail Rep. 2020 Oct;17(5):205-212

Ablation of the Brca1-Palb2 Interaction Phenocopies Fanconi Anemia in Mice
Park D, Bergin SM, Jones D, Ru P, Koivisto CS, Jeon YJ, Sizemore GM, Kladney RD, Hadjis A, Shakya R, Ludwig T
Cancer Res. 2020 Oct 1;80(19):4172-4184

Exercise-induced 3'-sialyllactose in breast milk is a critical mediator to improve metabolic health and cardiac function in mouse offspring
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Regulation of Cdc42 for polarized growth in budding yeast
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Microb Cell. 2020 May 19;7(7):175-189

Role of B Cell Lymphoma 2 in the Regulation of Liver Fibrosis in miR-122 Knockout Mice
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Genome Mining Reveals the Phosphonoalamide Natural Products and a New Route in Phosphonic Acid Biosynthesis
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ACS Chem Biol. 2020 Jul 17;15(7):1921-1929

Chemical crosslinking enhances RNA immunoprecipitation for efficient identification of binding sites of proteins that photo-crosslink poorly with RNA
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Arrhythmogenic Cardiomyopathy: Molecular Insights for Improved Therapeutic Design
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In utero estrogenic endocrine disruption alters the stroma to increase extracellular matrix density and mammary gland stiffness
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Histone acetyltransferase 1 is required for DNA replication fork function and stability
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J Biol Chem. 2020 Jun 19;295(25):8363-8373

Pumilio response and AU-rich elements drive rapid decay of Pnrc2-regulated cyclic gene transcripts
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Cell fusion is differentially regulated in zebrafish post-embryonic slow and fast muscle
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Discovery of in vivo Virulence Genes of Obligatory Intracellular Bacteria by Random Mutagenesis
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Targeting tRNA-synthetase interactions towards novel therapeutic discovery against eukaryotic pathogens.
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Activation of the Intracellular Pattern Recognition Receptor NOD2 Promotes Acute Myeloid Leukemia (AML) Cell Apoptosis and Provides a Survival Advantage in an Animal Model of AML
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Functional analysis reveals G/U pairs critical for replication and trafficking of an infectious non-coding viroid RNA
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Neuron-Specific Vitamin D Signaling Attenuates Microglia Activation and CNS Autoimmunity
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Front Neurol. 2020 Jan 31;11:19

Hat1-Dependent Lysine Acetylation Targets Diverse Cellular Functions
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Impact and Intricacies of Bone Marrow Microenvironment in B-cell Lymphomas: From Biology to Therapy
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Inhibition of cytoplasmic cap methylation identifies 5' TOP mRNAs as recapping targets and reveals recapping sites downstream of native 5' ends
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Nucleic Acids Res. 2020 Apr 17;48(7):3806-3815

Radioisotope-Based Protocol for Determination of Central Carbon Metabolism in T Cells
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SRSF2 Regulation of MDM2 Reveals Splicing as a Therapeutic Vulnerability of the p53 Pathway
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Mol Cancer Res. 2020 Feb;18(2):194-203

GREB1 regulates PI3K/Akt signaling to control hormone-sensitive breast cancer proliferation
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Osteogenesis imperfecta mutations in plastin 3 lead to impaired calcium regulation of actin bundling
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N-acetylcysteine differentially regulates the populations of bone marrow and circulating endothelial progenitor cells in mice with limb ischemia
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Multifaceted Roles of TIM-Family Proteins in Virus-Host Interactions
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